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        Note that additional data was saved in multiqc_data when this report was generated.

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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        Tool Citations

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        To help with this, you can download publication details of the tools mentioned in this report:

        About MultiQC

        This report was generated using MultiQC, version 1.20

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        This report has been generated by the fmalmeida/mpgap analysis pipeline. For information about how to interpret these results, please see the documentation.

        Report generated on 2024-03-06, 01:19 -03 based on data in: /array1/falmeida/NF_WORK/9c/ec4d4577a92fe1fac96da940917e82

        General Statistics

        Showing 10/10 rows and 2/2 columns.
        Sample NameN50 (Kbp)Assembly Length (Mbp)
        canu_assembly
        3713.7Kbp
        29.8Mbp
        canu_medaka_consensus
        3718.5Kbp
        29.9Mbp
        flye_assembly
        2284.2Kbp
        29.3Mbp
        flye_medaka_consensus
        2285.3Kbp
        29.3Mbp
        raven_assembly
        3783.5Kbp
        29.5Mbp
        raven_medaka_consensus
        3782.3Kbp
        29.5Mbp
        shasta_assembly
        136.8Kbp
        28.3Mbp
        shasta_medaka_consensus
        136.4Kbp
        28.3Mbp
        wtdbg2_assembly
        2043.8Kbp
        28.6Mbp
        wtdbg2_medaka_consensus
        2047.7Kbp
        28.6Mbp

        QUAST

        QUAST is a quality assessment tool for genome assemblies, written by the Center for Algorithmic Biotechnology.DOI: 10.1093/bioinformatics/btt086.

        Assembly Statistics

        Showing 10/10 rows and 4/4 columns.
        Sample NameN50 (Kbp)L50 (K)Largest contig (Kbp)Length (Mbp)
        canu_assembly
        3713.7Kbp
        0.0K
        4875.4Kbp
        29.8Mbp
        canu_medaka_consensus
        3718.5Kbp
        0.0K
        4881.8Kbp
        29.9Mbp
        flye_assembly
        2284.2Kbp
        0.0K
        3007.5Kbp
        29.3Mbp
        flye_medaka_consensus
        2285.3Kbp
        0.0K
        3009.4Kbp
        29.3Mbp
        raven_assembly
        3783.5Kbp
        0.0K
        4871.8Kbp
        29.5Mbp
        raven_medaka_consensus
        3782.3Kbp
        0.0K
        4874.1Kbp
        29.5Mbp
        shasta_assembly
        136.8Kbp
        0.1K
        479.0Kbp
        28.3Mbp
        shasta_medaka_consensus
        136.4Kbp
        0.1K
        478.2Kbp
        28.3Mbp
        wtdbg2_assembly
        2043.8Kbp
        0.0K
        3931.6Kbp
        28.6Mbp
        wtdbg2_medaka_consensus
        2047.7Kbp
        0.0K
        3937.9Kbp
        28.6Mbp

        Number of Contigs

        This plot shows the number of contigs found for each assembly, broken down by length.

        Created with MultiQC

        BUSCO

        BUSCO assesses genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs.DOI: 10.1093/bioinformatics/btv351.

        Lineage: fungi_odb10

        Created with MultiQC

        fmalmeida/mpgap Software Versions

        are collected at run time from the software output.

        Process Name Software Version
        CUSTOM_DUMPSOFTWAREVERSIONS python 3.9.16
        yaml 5.4.1
        Workflow Nextflow 23.10.0
        fmalmeida/mpgap 3.2
        canu canu 2.2
        flye flye 2.9.2-b1786
        medaka medaka 1.11.1
        quast busco 5.6.1
        quast v5.2.0
        raven raven 1.6.1
        shasta shasta 0.11.1
        wtdbg2 wtdbg2 2.5

        MultiQC v1.20 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.